Open-Access Data
CattleGTEx
- Exon Junctions
- Full summary statisitcs (cis-eQTLs)
- Full summary statisitcs (cis-sQTLs)
- Gene expression (TPM)
- Gene read counts
- Metadata
- Trans-eQTL
- Trans-sQTL
- TWAS Elastic Net model
- TWAS results
- Colocalization Plots
PigGTEx
- (cis-eQTL) Top associations for each protein-coding gene based on permutation mode.
- (cis-eQTL) Summary statisitcs of significant variant-gene associations for each tissue.
- (cis-eeQTL) Top associations for each exon based on permutation mode.
- (cis-eeQTL) Summary statisits of significant variant-exon associations for each tissue.
- (cis-sQTL) Top associations for each splicing gene based on permutation mode.
- (cis-sQTL) Summary statisitcs of significant variant-splicing event associations for each tissue.
- (cis-IncQTL) Top associations for each IncRNA based on permutation mode.
- (cis-IncQTL) Summary statisitcs of significant variant-IncRNA associations for each tissue.
- (cis-enQTL) Top associations for each enhancer based on permutation mode.
- (cis-enQTL) Summary statisits of significant variant-enhancer associations for each tissue.
- (cis-bieQTL) Top associations of breed interaction eQTL (genotype × breed ancestry).
- (cieQTL) Top associations of cell type interaction eQTL (genotype × cell type enrichment).
- Genotype files used for molQTL mapping across 34 pig tissues (Plink v1.9 binary format).
- Gene annotation of Sscrofa11.1 (v100).
- Gene expression (TPM) matrix for 34 tissues.
- Exon expression (TPM) matrix for 34 tissues.
- LncRNA expression (TPM) matrix for 34 tissues.
- Enhancer expression (TPM) matrix for 34 tissues.
- Normalized alternative splicing values (Percent Spliced In, PSI) for 34 tissues.
